Penginderaan Jauh dan Fotogrametri 3D untuk Pemetaan dan Analisis    Kuantitatif Terumbu Karang

Allemand, D., Ferrier-pagès, C., Furla, P., Houlbrèque, F., & Darwin, C. (2004). Biomineralisation in reef-building corals : from molecular mechanisms to environmental control. General Palaeontology, 3, 453–467. https://doi.org/10.1016/j.crpv.2004.07.011

Alvarez-filip, L., Dulvy, N. K., Gill, J. A., Watkinson, A. R., & Co, I. M. (2009). Flattening of Caribbean coral reefs : region-wide declines in architectural complexity. Proceedings The Royal Society, 276, 3019–3025. https://doi.org/10.1098/rspb.2009.0339

Anderson, K., Gaston, K. J., Anderson, K., & Gaston, K. J. (2013). Frontiers in Ecology and the Environment esa. Frontiers in Ecology and the Environment, 11(3), 138–146. https://doi.org/10.1890/120150

Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., Dunlap, M. J., Moriarty, V., Fan, T. Y., Tan, C. J., Chan, S., Treibitz, T., Gamst, A., Mitchell, B. G., & Kriegman, D. (2015). Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. PLoS ONE, 10(7), 1–22. https://doi.org/10.1371/journal.pone.0130312

Blaschke, T., & Geoffrey, J. (2001). Obect-oriented image analysis and scale-space: theory and methods and evaluating multiscale lanscape structure. International Archives of Photogrammetry and Remote Sensing, 34(Part 4/W5), 22–29.

Bryson, M., Ferrari, R., Figueira, W., Pizarro, O., Madin, J., Williams, S., & Byrne, M. (2017). Characterization of measurement errors using structure-from-motion and photogrammetry to measure marine habitat structural complexity. Ecology and Evolution, 7(15), 5669–5681. https://doi.org/10.1002/ece3.3127

Buckland, S. T., Borchers, D. L., Johnston, A., Henrys, P. A., & Marques, T. A. (2007). Line transect methods for plant surveys. Biometrics, 63(4), 989 – 998. https://doi.org/10.1111/j.1541-0420.2007.00798.x

Burke, L., Reytar, K., Spalding, M., & Perry, A. (2012). Reefs at Risk Revisited. World Resources Institute.

Burns, J. H. R., Delparte, D., Gates, R. D., & Takabayashi, M. (2015). Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. PeerJ, 2015(7). https://doi.org/10.7717/peerj.1077

Burns, J. H. R., Delparte, D., Kapono, L., & Belt, M. (2016). Assessing the impact of acute disturbances on the structure and composition of a coral community using innovative 3D reconstruction techniques. Methods in Oceanography, 1–11. https://doi.org/10.1016/j.mio.2016.04.001

Burns, J. H. R., Fukunaga, A., Pascoe, K., & Craig, B. (2019). 3D Habitat Complexity Of Coral Reefs In The Northwestern Hawaiian Islands Is Driven By Coral Assemblage Structure. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, XLII–2(W10), 61–67. https://doi.org/10.5194/isprs-archives-XLII-2-W10-61-2019

Casella, E., Collin, A., Harris, D., Ferse, S., Bejarano, S., Parravicini, V., Hench, J. L., & Rovere, A. (2017). Mapping coral reefs using consumer-grade drones and structure from motion photogrammetry techniques. Coral Reefs, 36, 269–275. https://doi.org/10.1007/s00338-016-1522-0

Congalton, R. G. (1991). A review of assessing the accuracy of classifications of remotely sensed data. Remote Sensing of Environment, 37(1), 35–46. https://doi.org/10.1016/0034-4257(91)90048-B

Correa, D., Villegas-Sánchez, C. A., Pérez-España, H., & Alvarez-Filip, L. (2024). Reef health status of the southwestern Gulf of Mexico and Mexican Caribbean coral reefs. Ciencias Marinas, 50(1). https://doi.org/10.7773/cm.y2025.3501

Cortés, J., & Reyes-Bonilla, H. (2017). Human Influences On Eastern Tropical Pacific Coral Communities and Coral Reefs. Coral Reefs of the World, 8, 549 – 563. https://doi.org/10.1007/978-94-017-7499-4_20

Costanza, R., Groot, R. De, Sutton, P., Ploeg, S. Van Der, Anderson, S. J., Kubiszewski, I., Farber, S., & Turner, R. K. (2014). Changes in the global value of ecosystem services. Global Environmental Change, 26, 2014.

Crabbe, M. J. C. (2016). The impact of climate change and the environment on coral growth. In The Cnidaria, past, present and Future: The World of Medusa and her Sisters. https://doi.org/10.1007/978-3-319-31305-4_35

David Lyzenga. (1981). Remote sensing of bottom reflectance and water attenuation parameters in shallow water using aircraft and LANDSAT data. International Journal of Remote Sensing, 2(1), 71–82.

English, S., Wilkinson, C., & Baker, V. (1997). Survey manual for tropical marine resources. In Australian Institute of Marine Science, Townsville (2nd Edition). Australian Institute of Marine Science.

Eric J Hochberg, Marlin J Atkinson, & Serge Andréfouët. (2003). Spectral reflectance of coral reef bottom-types worldwide and implications for coral reef remote sensing. Remote Sensing of Environment, 85(2), 159–173.

Falkowski, P. G., Dubinsky, Z., Muscatine, L., & Porter, J. W. (1984). Light and the Bioenergetics of a Symbiotic Coral. BioScience, 34(11), 705–709. https://doi.org/https://doi.org/10.2307/1309663

Ferrari, R., Figueira, W. F., Pratchett, M. S., Boube, T., Adam, A., Kobelkowsky-Vidrio, T., Doo, S. S., Atwood, T. B., & Byrne, M. (2017). 3D photogrammetry quantifies growth and external erosion of individual coral colonies and skeletons. Scientific Reports, 7(1), 1–9. https://doi.org/10.1038/s41598-017-16408-z

Ferrari, R., McKinnon, D., He, H., Smith, R. N., Corke, P., González-Rivero, M., Mumby, P. J., & Upcroft, B. (2016). Quantifying multiscale habitat structural complexity: A cost-effective framework for underwater 3D modelling. Remote Sensing, 8(2). https://doi.org/10.3390/rs8020113

Ferrario, F., Beck, M. W., Storlazzi, C. D., Micheli, F., Shepard, C. C., & Airoldi, L. (2014). The effectiveness of coral reefs for coastal hazard risk reduction and adaptation. Nature Communications, 5(May), 1–9. https://doi.org/10.1038/ncomms4794

Figueira, W., Ferrari, R., Weatherby, E., Porter, A., Hawes, S., & Byrne, M. (2015). Accuracy and Precision of Habitat Structural Complexity Metrics Derived from Underwater Photogrammetry. Remote Sensing, 2015(7), 16883–16900. https://doi.org/10.3390/rs71215859

Ford, A. K., Eich, A., McAndrews, R. S., Mangubhai, S., Nugues, M. M., Bejarano, S., Moore, B. R., Rico, C., Wild, C., & Ferse, S. C. A. (2018). Evaluation of coral reef management effectiveness using conventional versus resilience-based metrics. Ecological Indicators, 85(September 2017), 308–317. https://doi.org/10.1016/j.ecolind.2017.10.002

Foster, N. L., Box, S. J., & Mumby, P. J. (2008). Competitive effects of macroalgae on the fecundity of the reef-building coral Montastraea annularis. Marine Ecology Progress Series, 367(Lirman 2001), 143–152. https://doi.org/10.3354/meps07594

Gomez, E. D., & Yap, H. T. (1988). Monitoring reef conditions. Rostsea.

González-Vera, A. S., Wilting, T. J. S., Holten, A. P. C., van Heijst, G. J. F., & Duran-Matute, M. (2020). High-resolution single-camera photogrammetry: incorporation of refraction at a fluid interface. Experiments in Fluids, 61(1). https://doi.org/10.1007/s00348-019-2826-y

Good, A. M., & Bahr, K. D. (2021). The coral conservation crisis: interacting local and global stressors reduce reef resiliency and create challenges for conservation solutions. SN Applied Sciences, 3(3). https://doi.org/10.1007/s42452-021-04319-8

Graham, N. A. J., Wilson, S. K., Jennings, S., Polunin, N. V. C., Bijoux, J. P., & Robinson, J. (2006). Dynamic fragility of oceanic coral reef ecosystems. Proceedings of the National Academy of Sciences of the United States of America, 103(22), 8425–8429. https://doi.org/10.1073/pnas.0600693103

Green, E. P., Mumby, P. J., Edwards, A. J., & Christopher D. Clark. (2000). Remote Sensing Handbook for Tropical Coastal Management Edmund. UNESCO.

Green, R. H., & Smith, S. R. (1997). Sample program design and environmental impact assessment on coral reefs. Proc 8th Int Coral Reef Sym, 1459–1464.

Handoko, A., Muhsoni, F. F., & Irawan, D. (2025). Estimation of coral reef area volume and weight using a three dimensions ( 3D ) photogrammetry. EPJ Web of Conferences, 01043.

Hedley, J. D., Roelfsema, C. M., Chollett, I., Harborne, A. R., Heron, S. F., Weeks, S. J., Skirving, W. J., Strong, A. E., Mark Eakin, C., Christensen, T. R. L., Ticzon, V., Bejarano, S., & Mumby, P. J. (2016). Remote sensing of coral reefs for monitoring and management: A review. Remote Sensing, 8(2). https://doi.org/10.3390/rs8020118

Hill, J., & Wilkinson, C. (2004). Methods for ecological monitoring of coral reefs. In Australian Institute of Marine Science, Townsville. https://doi.org/10.1017/CBO9781107415324.004

Hochberg, E. J., & Marlin J Atkinson. (2003). Capabilities of remote sensors to classify coral, algae, and sand as pure and mixed spectra. Remote Sensing of Environment, 85(1), 174–189. https://doi.org/https://doi.org/10.1016/S0034-4257(02)00202-X

Hoegh-Guldberg, O. (1999). Climate change, coral bleaching and the future of the world’s coral reefs. Marine and Freshwater Research, 50(8), 839–866. https://doi.org/https://doi.org/10.1071/MF99078

Hughes, T. P., Kerry, J. T., Baird, A. H., Connolly, S. R., Dietzel, A., Eakin, C. M., Heron, S. F., Hoey, A. S., Hoogenboom, M. O., Liu, G., McWilliam, M. J., Pears, R. J., Pratchett, M. S., Skirving, W. J., Stella, J. S., & Torda, G. (2018). Global warming transforms coral reef assemblages. Nature, 556(7702), 492–496. https://doi.org/10.1038/s41586-018-0041-2

Irawan, D., & Muhsoni, F. F. (2023). Metode Foto 3D Underwater Untuk Terumbu Karang. UTMPRESS.

Irawan, D., & Muhsoni, F. F. (2024). Perbandingan Teknik Pengukuran Terumbu Karang Menggunakan Metode 2 Dimensi Dan 3 Dimensi Di Pulau Gili Labak, Sumenep. Jurnal Kelautan, 17(3), 235–242.

Irawan, D., Mukti, A. T., Andriyono, S., & Muhsoni, F. F. (2023). Assessment of coral reef condition using upt (underwater photo transect) method on gili labak island madura indonesia. IOP Conference Series: Earth and Environmental Science, 1273(1). https://doi.org/10.1088/1755-1315/1273/1/012062

J.-P. Gattuso, M. Frankignoulle, & Wollast, R. (1998). Carbon And Carbonate Metabolism In Coastal Aquatic Ecosystems. Annual Review of Ecology, Evolution, and Systematics, 29, 405–434. https://doi.org/https://doi.org/10.1146/annurev.ecolsys.29.1.405

James, M. R., Robson, S., Centre, L. E., & Engineering, G. (2014). Mitigating systematic error in topographic models derived from UAV and ground-based image networks. 1420(June), 1413–1420. https://doi.org/10.1002/esp.3609

Jordt-Sedlazeck, A., & Reinhard Koch. (2013). Refractive Structure-from-Motion on Underwater Images. EEE International Conference on Computer Vision.

Joyce, K. E., Duce, S., Leahy, S. M., Leon, J., & Maier, S. W. (2019). Principles and practice of acquiring drone-based image data in marine environments. Marine and Freshwater Research, 70(7), 952–963. https://doi.org/10.1071/MF17380

Kench, P. S., & Owen, S. D. (2015). Coral Reef Systems and the Complexity of Hazards. In Coastal and Marine Hazards, Risks, and Disasters. https://doi.org/10.1016/B978-0-12-396483-0.00015-7

Kleypas, J. A., Anthony, K. R. N., & Jean-Pierre Gattuso. (2011). Coral reefs modify their seawater carbon chemistry – case study from a barrier reef ( Moorea , French Polynesia ). Global Change Biology, 1–12. https://doi.org/10.1111/j.1365-2486.2011.02530.x

Kohler, K. E., & Gill, S. M. (2006). Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Computers and Geosciences, 32(9), 1259–1269. https://doi.org/10.1016/j.cageo.2005.11.009

Lazuardi, W., Wicaksono, P., & M A Marfai. (2021). Remote sensing for coral reef and seagrass cover mapping to support coastal management of small islands Remote sensing for coral reef and seagrass cover mapping to support coastal management of small islands. IOP Conference Series: Earth and Environmental Science. https://doi.org/10.1088/1755-1315/686/1/012031

Leujak, W., & Ormond, R. F. G. (2007). Comparative accuracy and efficiency of six coral community survey methods. Journal of Experimental Marine Biology and Ecology, 351(1–2), 168–187. https://doi.org/10.1016/j.jembe.2007.06.028

Macedo, T., & van Woesik, R. (2026). Growth rates of coral reefs peaked at 25 °C through the Holocene. PLOS ONE, 21(3 March). https://doi.org/10.1371/journal.pone.0342527

Magel, J. M. T., Burns, J. H. R., Gates, R. D., & Baum, J. K. (2019). Effects of bleaching-associated mass coral mortality on reef structural complexity across a gradient of local disturbance. Scientific Reports, 9(1), 1–12. https://doi.org/10.1038/s41598-018-37713-1

Marre, G., Holon, F., Luque, S., Boissery, P., & Deter, J. (2019). Monitoring marine habitats with photogrammetry: A cost-effective, accurate, precise and high-resolution reconstruction method. Frontiers in Marine Science, 6(May). https://doi.org/10.3389/fmars.2019.00276

McCord, S. E., Webb, N. P., Van Zee, J. W., Courtright, E. M., Billings, B., Duniway, M. C., Edwards, B. L., Kachergis, E., Moriasi, D., Morra, B., Nafus, A., Newingham, B. A., Scott, D. A., & Toledo, D. (2025). Optimizing sampling across transect-based methods improves the power of agroecological monitoring data. Journal of Environmental Quality, 54(3), 706 – 719. https://doi.org/10.1002/jeq2.20678

Mcfield, M., Kramer, P., & Mcpherson, M. (2007). Healthy Reefs for Healthy People A Guide to Indicators of Reef Health and Social Well-being in the Mesoamerican Reef Region Authors Maya Gorrez. Healthy Reefs for Healthy People Initiative.

McWilliam, M., Anthony, K., Ceccarelli, D. M., Crocker, R., Emslie, M. J., Iwanaga, T., Koenig, K., Ferrari, R., Matthews, S., Heneghan, R., Hoey, A. S., Wilson, S. K., & Pratchett, M. S. (2026). Capturing the dimensions of coral reef biodiversity. Ecological Indicators, 186. https://doi.org/10.1016/j.ecolind.2026.114866

Moberg, F., & Folke, C. (1999). Ecological goods and services of coral reef ecosystems. Ecological Economics 29, 29, 161747.

Mobley, C. (1994). Light and Water: Radiative Transfer in Natural Waters. Academic Press.

Muhsoni, F. F., Choiron, M., Hamim, S., Irawan, D., Zainuri, M., & Sofarini, D. (2026). Comparison of line intercept transect method , underwater photo transect , underwater 3D photo , drone , and satellite imagery in coral reef survey. The Egyptian Journal of Aquatic Research, April. https://doi.org/10.1016/j.ejar.2026.04.002

Muhsoni, F. F., & Efendy, M. (2017). Coral reefs eco tourism sustainability management In the Gili Labak Island using rapfish method. Jurnal Kelautan, 10(2), 192–204. https://doi.org/https://doi.org/10.21107/jk.v10i2.3235

Muhsoni, F. F., Salsabil, A. T. S., Safa, Zainuri, M., Samba, A. B., Fauzyah, E., & Irawan, D. (2025). Mapping coral reefs growth using drone imagery in Gili Labak Island , Sumenep District , East Java , Indonesia. Biodiversitas, 26(3), 1180–1188. https://doi.org/10.13057/biodiv/d260317

Muhsoni, F., & Irawan, D. (2023). Calculation of coral reef volume using 3D underwater photos on Gili Labak Island , Indonesia. AACL Bioflux, 16(3), 1210–1219. http://www.bioflux.com.ro/aacl

N. A. J. Graham, & K. L. Nash. (2013). The importance of structural complexity in coral reef ecosystems. Coral Reefs, 32, 315–326.

Nadon, M.-O., & Field, G. S. (2005). Field and simulation analyses of visual methods for sampling coral cover. In Coral Reefs. https://doi.org/10.1007/s00338-005-0074-5

Nomani, S. Z., Oli, M. K., & Carthy, R. R. (2012). Line Transects by Design : The Influence of Study Design , Spatial Distribution and Density of Objects on Estimates of Abundance. The Open Ecology Journal, 5(1), 25–44.

Nybakken, & Willard, J. (2005). Marine biology: An ecological approach (5th ed.). Benjamin Cummings.

Pendleton, L., Donato, D. C., Murray, B. C., Crooks, S., Jenkins, W. A., Megonigal, P., Pidgeon, E., Herr, D., Gordon, D., & Baldera, A. (2012). Estimating Global ‘“ Blue Carbon ”’ Emissions from Conversion and Degradation of Vegetated Coastal Ecosystems. PLoS ONE, 7(9). https://doi.org/10.1371/journal.pone.0043542

Phinn, S. R., Roelfsema, C. M., & Mumby, P. J. (2012). International Journal of Remote analysis for mapping geomorphic and ecological zones on coral reefs. International Journal of Remote Sensing, 33(12), 3768–3797. https://doi.org/http://dx.doi.org/10.1080/01431161.2011.633122 PLEASE

Piñeros, V. J., Reveles-Espinoza, A. M., & Monroy, J. A. (2024). From Remote Sensing to Artificial Intelligence in Coral Reef Monitoring. Machines, 12(10), 1–32. https://doi.org/10.3390/machines12100693

Putri, R. A., & Muhsoni, F. F. (2025). Status dan Kondisi Terumbu Karang Mengunakan Metode Line Intercept Transect ( LIT ) di Pulau Gili Labak Sumenep. Samakia: Jurnal Ilmu Perikanan, 16(1), 106–113.

Richards, J. A. (2013). Remote Sensing Digital Image Analysis (4th ed.). Springer. https://doi.org/10.1007/978-3-642-88087-2

Rodríguez-Díaz, E., Jiménez-Rodríguez, L. O., Vélez-Reyes, M., Gilbes, F., & DiMarzio, C. A. (2003). Subsurface Detection of Coral Reefs in Shallow Waters using Hyperspectral Data. Proceedings of SPIE - The International Society for Optical Engineering, 5093, 538 – 546. https://doi.org/10.1117/12.486311

Silvia, D., & Muhsoni, F. (2024). Analisis Status Pengelolaan Ekowisata Di Pulau Gili Labak Sumenep Menggunakan Metode Rapfish. Journal Of Marine Research, 13(3), 397–406.

Spalding, D., & Ravilious, C. (2002). World atlas of coral reefs. In Choice Reviews Online (Vol. 39, Issue 05). https://doi.org/10.5860/choice.39-2540

Storlazzi, C. D., Dartnell, P., Hatcher, G. A., & Gibbs, A. E. (2016). End of the chain? Rugosity and fine-scale bathymetry from existing underwater digital imagery using structure-from-motion (SfM) technology. Coral Reefs, 35(3), 889–894. https://doi.org/10.1007/s00338-016-1462-8

Suryadi, L. P. F., Irwan, Amiluddin, M., Hawati, & Irwansyah. (2025). The Influence of Oceanographic Factors on the Growth Rate of Transplanted Acropora muricata in Bone Bay, Indonesia. Egyptian Journal of Aquatic Biology and Fisheries, 29(5), 2067 – 2077. https://doi.org/10.21608/ejabf.2025.420196.6508

Urbina-Barreto, I., Garnier, R., Elise, S., Pinel, R., Dumas, P., Mahamadaly, V., Facon, M., Bureau, S., Peignon, C., Quod, J. P., Dutrieux, E., Penin, L., & Adjeroud, M. (2021). Which Method for Which Purpose? A Comparison of Line Intercept Transect and Underwater Photogrammetry Methods for Coral Reef Surveys. Frontiers in Marine Science, 8(May). https://doi.org/10.3389/fmars.2021.636902

Veron, J. E. N., Devantier, L. M., Turak, E., & Green, A. L. (2009). Delineating the Coral Triangle. Journal of Coral Reef Studies, 11, 91–100.

Westoby, M. J., Brasington, J., Glasser, N. F., Hambrey, M. J., & Reynolds, J. M. (2012). ‘ Structure-from-Motion ’ photogrammetry : A low-cost , effective tool for geoscience applications. Geomorphology, 179, 300–314. https://doi.org/10.1016/j.geomorph.2012.08.021

Zhong, J., Li, M., Gruen, A., Liao, X., Qin, J., & Wang, B. (2025). A High-Quality Underwater 3D Reconstruction Solution for Coral Reef Environments Leveraging Advanced Photogrammetric Computer Vision Techniques. Photogrammetric Engineering and Remote Sensing, 91(6), 361 – 370. https://doi.org/10.14358/PERS.24-00156R3