Biokimia Pertanian: Dasar Molekuler untuk Produktivitas dan Keberlanjutan (Edisi 1)

Agustian J, Kamaruddin AH. 2016. The reaction mechanism and kinetics data of racemic atenolol kinetic resolution via enzymatic transesterification using free Pseudomonas fluorescens lipase. International Journal of Chemical Kinetics 48(5):253–265. doi:10.1002/kin.20986.

Aledo JC. 2022. Renz: an R package for the analysis of enzyme kinetic data. BMC Bioinformatics 23(1). doi:10.1186/s12859-022-04729-4.

Avaro AS, Santiago JG. 2022. Uncertainty quantification of Michaelis–Menten kinetic rates and its application to the analysis of CRISPR-based diagnostics. Angewandte Chemie 134(45). doi:10.1002/ange.202209527.

Ayalew Y, Retta N, Haki GD, Mohammed A, Mellesse A. 2016. Amino acid profile and protein quality in tuber and leaf of Coccinia abyssinica (Lam.) (Cogn.) accessions of Ethiopia. Food Science and Nutrition 5(3):722–729. doi:10.1002/fsn3.452.

Ballal A, Laurendon C, Salmon M, Vardakou M, Cheema J, Defernez M, O’Maille PE, Morozov AV. 2020. Sparse epistatic patterns in the evolution of terpene synthases. Molecular Biology and Evolution 37(7):1907–1924. doi:10.1093/molbev/msaa052.

Baumann P, Spulber M, Fischer O, Car A, Meier W. 2017. Investigation of horseradish peroxidase kinetics in an organelle-like environment. Small 13(17):1603943. doi:10.1002/smll.201603943.

Bowater RP, Bowater L, Husband T. 2020. Solving tomorrow’s problems: bioenergy and the environment. Cambridge: Royal Society of Chemistry.

Cardone MF, D’Addabbo P, Alkan C, Bergamini C, Catacchio CR, Anaclerio F, Chiatante G, Marra A, Giannuzzi G, Perniola R, et al. 2016. Inter-varietal structural variation in grapevine genomes. The Plant Journal 88(4):648–661. doi:10.1111/tpj.13274.

Chen L, Zhang Z, Hoshino A, Zheng HD, Morley MP, Arany Z, Rabinowitz JD. 2019. NADPH production by the oxidative pentose-phosphate pathway supports folate metabolism. Nature Metabolism 1(3):404–415. doi:10.1038/s42255-019-0043-x.

Choi B, Rempała GA, Kim JK. 2017. Beyond the Michaelis–Menten equation: accurate and efficient estimation of enzyme kinetic parameters. Scientific Reports 7(1). doi:10.1038/s41598-017-17072-z.

Chougule MPN, Bhosale MAP. 2023. Advanced trends in biotechnology. New Delhi: Academic Press.

Corpas FJ, Taboada J, Rivero RM, Reiter RJ, Palma JM. 2025. Functions of endogenously produced and exogenously applied melatonin in higher plants. Antioxidants and Redox Signaling 43(1–3):151–188. doi:10.1089/ars.2024.0889.

Du B, Zielinski DC, Kavvas E, Dräger A, Tan J, Zhang Z, Ruggiero KE, Arzumanyan GA, Palsson BØ. 2016. Evaluation of rate law approximations in bottom-up kinetic models of metabolism. BMC Systems Biology 10(1). doi:10.1186/s12918-016-0283-2.

Emrani J, Ahmed M, Newman RH, Thomas MD, Mowa CN, Teleha J. 2020. Introducing chemistry students to emerging technologies in gene editing, their applications, and ethical considerations. Journal of Chemical Education 97(7):1931–1943. doi:10.1021/acs.jchemed.9b01154.

Florjanczyk U, Ng DP, Andreopoulos S, Jenkinson J. 2018. Developing a three-dimensional animation for deeper molecular understanding of Michaelis–Menten enzyme kinetics. Biochemistry and Molecular Biology Education 46(5):561–565. doi:10.1002/bmb.21168.

He X, Sotelo-Orozco J, Rudolph C, Lönnerdal B, Slupsky CM. 2020. The role of protein and free amino acids on intake, metabolism, and gut microbiome: a comparison between breast-fed and formula-fed rhesus monkey infants. Frontiers in Pediatrics 7. doi:10.3389/fped.2019.00563.

Jeon MJ, Jeon YW. 2024. Enhanced enzymatic degradability of livestock blood pretreated with ultrasonic technique. Applied Sciences 14(4):1676. doi:10.3390/app14041676.

JM S-M. 2018. Biotechnology: impact on our life. Drug Design Development and Delivery Journal 1(1). doi:10.31021/ddddj.20181103.

Kari J, Andersen M, Borch K, Westh P. 2017. An inverse Michaelis–Menten approach for interfacial enzyme kinetics. ACS Catalysis 7(7):4904–4914. doi:10.1021/acscatal.7b00838.

Kembaren BBJA, Karnila R, Hasan B. 2024. Hydrolysate characteristics of berunok sea cucumber (Paracaudina australis) and total amino acid using pepsin enzymes. Asian Journal of Aquatic Sciences 7(1):156–160. doi:10.31258/ajoas.7.1.156-160.

Kiełczykowska M, Musik I, Luchowska-Kocot D, Polz-Dacewicz M. 2021. The influence of lithium and or selenium on plasma amino acids profile in rats. Annals of Agricultural and Environmental Medicine 29(1):136–142. doi:10.26444/aaem/139213.

Machado M, Machado S, Pimentel FB, Freitas VD, Alves RC, Oliveira MBP. 2020. Amino acid profile and protein quality assessment of macroalgae produced in an integrated multi-trophic aquaculture system. Foods 9(10):1382. doi:10.3390/foods9101382.

Medley K, Teo JJY, Woo SS, Hellerstein JL, Sarpeshkar R, Sauro HM. 2020. A compiler for biological networks on silicon chips. PLoS Computational Biology 16(9):e1008063. doi:10.1371/journal.pcbi.1008063.

Meráz M, Álvarez-Ramírez J, Vernon-Carter EJ, Reyes I, Hernández-Jaimes C, Martinez-Martinez F. 2020. A two competing substrates Michaelis–Menten kinetics scheme for the analysis of in vitro starch digestograms. Starch/Stärke 72(9–10). doi:10.1002/star.201900170.

Mohanta TK, Mohanta YK, Al-Harrasi A. 2022. Decoding the virtual 2D map of the chloroplast proteomes. Biology Procedures Online 24(1). doi:10.1186/s12575-022-00186-8.

Morin-Crini N, Fourmentin S, Fenyvesi É, Lichtfouse É, Torri G, Fourmentin M, Crini G. 2021. One hundred and thirty years of cyclodextrin discovery for health, food, agriculture, and the industry: a review. Environmental Chemistry Letters 19(3):2581–2617. doi:10.1007/s10311-020-01156-w.

Obomighie I, Prentice IJ, Lewin-Jones P, Bachtiger F, Ramsay N, Kishi-Itakura C, Goldberg MW, Hawkins TJ, Sprittles JE, Knight H, et al. 2025. Understanding pectin cross-linking in plant cell walls. Communications Biology 8(1). doi:10.1038/s42003-025-07495-0.

Ollas CD, Morillón R, Fotopoulos V, Puértolas J, Ollitrault P, Gómez-Cadenas A, Arbona V. 2019. Facing climate change: biotechnology of iconic Mediterranean woody crops. Frontiers in Plant Science 10. doi:10.3389/fpls.2019.00427.

Patwa N, Chakraborty B, Basak J. 2020. Expression study of an amino acid permease-like gene in Phaseolus vulgaris L. Plant Science Today 7(2):251–256. doi:10.14719/pst.2020.7.2.712.

Pérez-Díaz D, Acosta Y, Gómez LP, Campos CL, Lorente G, Figueroa LT, Vicente Ó, Enríquez G, Pérez-Bonachea L, Lorenzo JC. 2025. Cp4 epsps transgenesis enhanced soybean germination, yet no visual phenotypic differences from the control were detected. Notulae Botanicae Horti Agrobotanici Cluj-Napoca 53(2):14600. doi:10.15835/nbha53214600.

Putica K. 2022. Development and validation of a four-tier test for the assessment of secondary school students’ conceptual understanding of amino acids, proteins, and enzymes. Research in Science Education 53(3):651–668. doi:10.1007/s11165-022-10075-5.

Raj R. 2019. Role of different kinds of microorganism in sustainable agriculture. Acta Scientific Agriculture 3(11):25–27. doi:10.31080/asag.2019.03.0679.

Rajeswar S, Narasimhan S. 2021. PEG-induced drought stress in plants: a review. Research Journal of Pharmacy and Technology. In press.

Risdianto H, Sugesty S. 2020. Kinetic study on crude laccase of Marasmius sp. from solid state fermentation. Key Engineering Materials 840:131–136. doi:10.4028/www.scientific.net/KEM.840.131.

Saganuwan SA. 2021. Application of modified Michaelis–Menten equations for determination of enzyme inducing and inhibiting drugs. BMC Pharmacology and Toxicology 22(1). doi:10.1186/s40360-021-00521-x.

Saleem MH, Usman K, Rizwan M, Jabri HA, Alsafran M. 2022. Functions and strategies for enhancing zinc availability in plants for sustainable agriculture. Frontiers in Plant Science 13. doi:10.3389/fpls.2022.1033092.

Sarıca Ş, Yurtseven S, Polat IH. 2020. Supplementing diets for broilers that are low in crude protein and amino acids with protease. South African Journal of Animal Science 50(4):521–528. doi:10.4314/sajas.v50i4.4.

Shringarpure N. 2022. Role of biotechnology in agriculture. International Journal of Scientific Research in Engineering and Management 6(6). doi:10.55041/ijsrem14705.

Song Y, Wang XD, Rose RJ. 2017. Oil body biogenesis and biotechnology in legume seeds. Plant Cell Reports 36(10):1519–1532. doi:10.1007/s00299-017-2201-5.

Stroberg W, Schnell S. 2016. On the estimation errors of KM and v from time-course experiments using the Michaelis–Menten equation. Biophysical Chemistry 219:17–27. doi:10.1016/j.bpc.2016.09.004.

Toprak U. 2025. Recent insights into insect physiology and biochemistry. Archives of Insect Biochemistry and Physiology 118(2). doi:10.1002/arch.70034.

Uzak D, Atiroğlu A, Atiroğlu V, Çakıroğlu B, Özacar M. 2019. Reduced graphene oxide/Pt nanoparticles/Zn-MOF-74 nanomaterial for a glucose biosensor construction. Electroanalysis 32(3):510–519. doi:10.1002/elan.201900599.

VanDee L, Teague A, East T, Jacinto KR, Carter M, Totty J, Adams PD, Muhoza D. 2024. A cost-effective enzyme kinetics and inhibition model for biochemistry education and research. Biochemistry and Molecular Biology Education 52(5):588–598. doi:10.1002/bmb.21845.

Vangenechten B, Coninck BD, Ceusters J. 2025. How to improve the potential of microalgal biostimulants for abiotic stress mitigation in plants. Frontiers in Plant Science 16. doi:10.3389/fpls.2025.1568423.

Venkataramanaiah P, Reddy M. 2024. Advances in biotechnology: current trends and its future scope. Hyderabad: Academic Publishers.

Vosika ZB, Mitić VV, Vasić A, Lazović G, Matija L, Kocić LM. 2017. Multistep generalized transformation method applied to solving equations of discrete and continuous time-fractional enzyme kinetics. Communications in Nonlinear Science and Numerical Simulation 44:373–389. doi:10.1016/j.cnsns.2016.08.024.

Wang H, Cui S, Fu J, Gong H, Liu S. 2023. Sulfur application improves the nutritional quality of maize by regulating the amino acid balance of grains. Agronomy 13(12):2912. doi:10.3390/agronomy13122912.

Yadav UP, Ayre BG, Bush DR. 2015. Transgenic approaches to altering carbon and nitrogen partitioning in whole plants: assessing the potential to improve crop yields and nutritional quality. Frontiers in Plant Science 6. doi:10.3389/fpls.2015.00275.

Yang J, Huang J, Zhu Z, Huang M. 2020. Investigation of optimal conditions for production of antioxidant peptides from duck blood plasma: response surface methodology. Poultry Science 99(12):7159–7168. doi:10.1016/j.psj.2020.08.060.

Yun-long W, Wu X, An Y, Xie H, Hao F, Tang H. 2020. Quantitative metabonomic phenotypes in different structures of mung bean (Vigna radiata) seeds and their germination-associated dynamic changes. Journal of Proteome Research 19(8):3352–3363. doi:10.1021/acs.jproteome.0c00236.

Zhang Q, Yi C, Destouni G, Wohlfahrt G, Kuzyakov Y, Li R, Kutter E, Chen D, Rietkerk M, Tian Z, et al. 2025. How Michaelis–Menten kinetics can represent ecosystem-scale respiration: scale and applicability. Environmental Research Letters 20(4):041003. doi:10.1088/1748-9326/adc31a.

Zhdanov VP, Höök F. 2015. Kinetics of enzymatic reactions in lipid membranes containing domains. Physical Biology 12(2):026003. doi:10.1088/1478-3975/12/2/026003.

Краєвська СП, Stetsenko N, Korol O. 2017. Comparing between the amino acid composition of flax seeds before and after germination. Agrobiodiversity Improvement for Nutrition, Health and Life Quality. In press.

Столбикова АВ, Дударева ЛВ, Рудиковский АВ, Stavitskaya ZO, Копытина ТВ, Rudikovskaya EG. 2023. Characteristics of composition and content of auxins in tissues of Siberian apple tree Malus baccata L. Borkh. Proceedings of Universities: Applied Chemistry and Biotechnology 12(4):620–626. doi:10.21285/2227-2925-2022-12-4-620-626.